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Core packages

dbverse currently consists of four core packages that contain classes, generics, and methods for representing and analyzing scientific data objects in a DuckDB database.

  1. {dbmatrix-r} - Database-backed operations for sparse and dense matrices
  2. {dbspatial-r} - Database-backed operations for spatial geometries
  3. {dbproject-r} - Database connection management utilities and base class definitions for dbverse objects.
  4. {dbsequence-r} - Database-backed operations for biological sequence analysis (Incubating).
  5. {mosaicShiny} - Database-backed visualizations leveraging uwdata/mosaic in R (Incubating).

Extensions

Packages leveraging dbverse.

  • GiottoDB
    • Database-backed operations for spatial omics data analysis.
  • Giotto
    • A comprehensive spatial transcriptomic analysis toolbox.