dbverse
Note: {dbverse} is in early development. Changes to the below are likely to occur.
Class Diagram
classDiagram
direction LR
namespace Scientific-Data {
class Tabular{
.mtx
.csv
.parquet
dgcMatrix
matrix
data.frame
data.table
}
class Geometries{
50+ spatial file formats
sf::sf
terra::spatVector
}
class Biological-Sequences{
10+ genomic file formats
}
}
namespace computer {
class database
}
namespace dbverse {
class dbmatrix-r{
class dbMatrix
}
class dbspatial-r{
class dbSpatial
}
class dbsequence-r{
class dbSequence
}
class dbproject-r{
class dbData
}
}
namespace dbmatrix-r {
class dbMatrix {
<<S4 Class>>
+ value: tbl_duckdb_connection
+ name: character
+ dim_names: list
+ dims: integer
+ init: logical
- Arith()
- Ops()
- Math()
- Summary()
- Matrix::
- matrix::
}
}
namespace dbspatial-r {
class dbSpatial{
<<S4 Class>>
+ value: tbl_duckdb_connection
+ name: character
- ST_*(geom) [DuckDB Spatial Extension]
}
}
namespace dbsequence-r {
class dbSequence{
<<S4 Class>>
+ value: tbl_duckdb_connection
+ name: character
}
}
namespace dbproject-r {
class dbData {
<<base virtual class>>
+ value: ANY (tbl_sql)
+ name: character
- DBI::()
- dplyr::()
- dbReconnect()
- autoreconnection()
}
}
Tabular <..> dbmatrix-r : read/write
Geometries <..> dbspatial-r : read/write
Biological-Sequences <..> dbsequence-r : read/write
dbmatrix-r --> dbproject-r
dbspatial-r --> dbproject-r
dbsequence-r --> dbproject-r
dbproject-r <..> database : connect/disconnect/cache